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Report for Clinical Trial NCT01378299

Developed by Shray Alag, 2020.
SNP Clinical Trial Gene

CYP19A1 Gene and Pharmacogenetics of Response

Testosterone (T) replacement prevents bone loss and relieves symptoms associated with androgen deficiency in male patients with hypogonadism, but at the expense of an increase in prostate-related adverse events and in the hematocrit values above the normal which may lead to bad circulatory outcomes. Most of the effects of T on the male skeleton are mediated by its conversion to estradiol (E2) by the enzyme aromatase. Genetic variations in the aromatase (CYP19A1) gene result in enzymes with variable activity and variable levels of E2 and T. This project is designed to determine if genetic variations in the CYP19A1 gene will result in differences in the skeletal response and incidence of side effects from T treatment in patients with low T. A large number of male Veterans are on T. Results from this project will help identify patients who would benefit from the therapy from those at risk for side effects, and would definitely have an impact in the future care of these patients and male patients in general once genetic profiling becomes part of the standard of care.

NCT01378299 Hypogonadism
MeSH: Hypogonadism
HPO: Gonadotropin deficiency Hypergonadotropic hypogonadism Hypogonadism Hypogonadotrophic hypogonadism

1 Interventions

Name: Testosterone Cypionate

Description: Testosterone cypionate was administered at 200 mg by intramuscular injection every 2 weeks. DEPo-Testosterone Injection, for intramuscular injection, contains testosterone cypionate which is the oil-soluble 17 (beta)-cyclopentylpropionate ester of the androgenic hormone testosterone. Testosterone cypionate is a white or creamy white crystalline powder, odorless or nearly so and stable in air. It is insoluble in water, freely soluble in alcohol, chloroform, dioxane, ether, and soluble in vegetable oils. The chemical name for testosterone cypionate is androst-4-en-3-one,17-(3-cyclopentyl-1oxopropoxy)-, (178)-. Its molecular formula is CvH400a, and the molecular weight of 412.61.

Type: Drug

Arm 1: Testosterone Cypionate


Primary Outcomes

Description: Percent change in bone mineral density from baseline to 18 months

Measure: Percent Change in Bone Mineral Density (BMD) According to rs700518 Polymorphism in the CYP19A1 Gene

Time: form baseline to 18 months

Description: Percent change in bone mineral density from baseline to 18 months.

Measure: Percent Change in Bone Mineral Density (BMD) According to the rs1062033 Polymorphism in the CYP19A1 Gene

Time: baseline to 18 months

Secondary Outcomes

Description: Percent changes in bone mineral density from baseline

Measure: Percent Change in Bone Mineral Density According to Body Mass Index (BMI)

Time: baseline to 18 months

Description: Percent change in PSA from baseline to 18 months

Measure: Percent Change in Prostate-specific Antigen (PSA) According to the rs700518 Polymorphism of the CYP19A1 Gene

Time: From baseline to 18 months

Description: Percent change in PSA from baseline at 18 months

Measure: Percent Change in Prostate-specific Antigen (PSA) According to the rs1062033 Polymorphism of the CYP19A1 Gene

Time: from baseline to 18 months

Description: Percent change in hematocrit from baseline to 18 months

Measure: Percent Change in Hematocrit According to the Genotype of the 700518 Polymorphism of the CYP19A1gene

Time: baseline to 18 months

Description: Percent change in hematocrit from baseline to 18 months

Measure: Percent Change in Hematocrit According to re1062033 Polymorphism of the CYP19A1 Gene

Time: Baseline to 18 months

Description: Percent change in gene expression from baseline to 18 months

Measure: Percent Change in Aromatase Gene Activity From the Buffy Coat According to the 700518 Polymorphism of the CYP19A1 Gene

Time: Baseline to 6 months

Description: Percent change in bone turnover from baseline to 18 months.

Measure: Percent Change in Bone Turnover Markers According to the rs700518 Polymorphism of the CYP19A1 Gene

Time: Baseline to 18 months

Description: Percent change in bone turnover markers

Measure: Percent Change in Bone Turnover Markers According to the rs1062033 Polymorphism of the CYP19A1 Gene

Time: Baseline to 18 months

Description: Percent change in bone mineral density from baseline to 18 months

Measure: Percent Change in Bone Mineral Density According the Presence of Diabetes Mellitus

Time: Baseline to 18 months

Description: Percent change in bone turnover markers from baseline to 18 months.

Measure: Percent Change in Bone Turnover Markers According the Presence of Diabetes Mellitus

Time: Baseline to 18 months

Purpose: Other

Single Group Assignment


There are 2 SNPs

SNPs


1 rs1062033

Percent Change in Bone Mineral Density (BMD) According to the rs1062033 Polymorphism in the CYP19A1 Gene.

Percent Change in Prostate-specific Antigen (PSA) According to the rs1062033 Polymorphism of the CYP19A1 Gene.

Percent change in bone turnover from baseline to 18 months.. Percent Change in Bone Turnover Markers According to the rs1062033 Polymorphism of the CYP19A1 Gene.


2 rs700518

Percent Change in Bone Mineral Density (BMD) According to rs700518 Polymorphism in the CYP19A1 Gene.

Percent Change in Prostate-specific Antigen (PSA) According to the rs700518 Polymorphism of the CYP19A1 Gene.

Percent Change in Bone Turnover Markers According to the rs700518 Polymorphism of the CYP19A1 Gene.



HPO Nodes


HPO:
Gonadotropin deficiency
Genes 11
KISS1R CHD7 SEMA3E FSHB PCSK1 FGFR1 LHX3 LHX3 GLI3 POMC POMC
Hypergonadotropic hypogonadism
Genes 63
TWNK RIN2 CYB5A LHCGR VAMP7 ZFPM2 AMACR CTDP1 LEP AHSG SOX9 BMP15 POLA1 FANCD2 MRE11 FANCA FANCC CYP19A1 ITGB6 GATA4 LSS TYMP SAMD9 MGME1 BMPR1B FANCE LMNA CYP17A1 SCP2 POLR3B WT1 NR0B1 GNAS POLR3A TWNK LEPR POLR1C ZBTB20 COQ2 SRY ALMS1 LEPR DMRT3 CLPP NR5A1 LMNA POLG PMM2 DCAF17 FANCB GNAS CYP17A1 SIL1 MAP3K1 SLC29A3 WT1 RIN2 MGME1 GALT RRM2B CYP19A1 WWOX POLG
Hypogonadism
Genes 515
PDE6A IDH3A AMACR IER3IP1 CTDP1 PCARE EIF2S3 SOX9 SEMA3E OPA1 RECQL4 RP1 ERCC2 CYP19A1 GATA4 LZTFL1 TTC8 ANOS1 TYMP CDKN1C C8ORF37 MKRN3 POLR3B FLRT3 FSHB SNRNP200 DUSP6 BBS4 COQ2 EYS LEPR PNPLA6 NR5A1 PRPF4 ARL6 CTDP1 RDH12 IGF1 ERCC4 SOX9 ARL3 PMM2 SOX10 RRAS2 TAC3 NR2E3 CUL4B SPRY4 ERCC4 ARL2BP LHB FANCF PRPF31 PRCD RLBP1 FOXA2 WFS1 PPM1B PNPLA6 CAMKMT ALX4 SRY LHCGR ZFPM2 DHDDS BCS1L BBS5 CDH23 LEP CLIP2 BMP2 IFT140 RP2 REEP6 STEAP3 PTCH2 CBX2 RNF216 PROK2 NECTIN1 CNGA1 SAMD9 SUFU PNPLA6 BMPR1B GNRHR KISS1R SDCCAG8 HS6ST1 SOX3 WT1 ARSL LZTR1 TBL2 ALMS1 DMRT3 AIP PRPH2 HAMP DCAF17 SNORD115-1 PRPF8 GUCA1B ATRX FANCG POMGNT1 SUFU RAB3GAP2 SIL1 AIP KIAA1549 MRPS7 IFT27 GNAS BCS1L SLC29A3 DHH FGF17 GJB2 IL17RD HERC2 SKI CYP19A1 WWOX POLG CYB5A GTF2I TACR3 TWNK HFE SMARCB1 PRPF6 FANCA ZNF408 PROP1 ITGB6 NR0B1 PRDM16 PROM1 BBS10 PEX1 PNPLA6 NPAP1 DUSP6 RAD51 BEST1 SLC52A3 CYP17A1 DNAL4 SCP2 BBS1 FSHB ERCC2 STS TUB FANCB TAC3 RAD51 PRLR BBS7 GABRD SMCHD1 GNRH1 FANCD2 POLR3A POU1F1 WDR11 RP9 CLPP GNAS LMNA RBM28 WRN CHD7 SEMA3E DCAF17 SDCCAG8 RBP3 FANCB GNAS BRCA1 MAP2K1 CYP17A1 ANOS1 NSMF WT1 NPHP1 BRAF XRCC2 MAK CCDC141 IMPDH1 INPP5K RIN2 ERCC5 NR0B1 PTPN11 PRKAR1A NR0B1 NDN FAM161A NRL BBS10 PDE4D SPRY4 PRKAR1A DUSP6 BMP15 MAP3K1 SOS2 LAS1L FANCC MKKS BBS5 RRAS FANCL SLC52A2 TP53 MRAS RNU4ATAC GPR101 HESX1 TGFB1 POLR3A PSAT1 ALG1 SIL1 BBS12 IFT74 TRIM32 ERCC1 NR5A1 SOX10 PHGDH PTPN11 KAT6B MGME1 ALG1 ERCC3 PROP1 OFD1 PTDSS1 RAD51C ERCC6 IFT172 PRKAR1A RIT1 RPGR ATM BBS9 SNORD116-1 VAMP7 PCSK1 FGFR1 RAB3GAP1 ANTXR1 HJV AXL BAZ1B KRAS RASA2 MYH3 NSMF TACR3 TFR2 OTX2 PROK2 FANCD2 WFS1 IFT88 MRE11 PDE6B RGR ERCC3 HSD17B3 SOS1 RFWD3 ERCC2 DCC NEK2 RFC2 CA4 RERE RNF216 CHRNG RHO FGF8 RAF1 SCAPER SMCHD1 SIX6 LEP CRB1 SRY PEX6 GTF2IRD1 POLR3B PROP1 HESX1 ANK1 GNRH1 FANCI POLD1 MAP3K1 SOX10 FGF17 SLC29A3 PDE11A CDH23 MAD2L2 PMM2 HDAC8 SEMA3A RBM28 BRAF AHR PWRN1 DMPK BMP4 SLC39A4 LZTFL1 PROK2 FANCA CTNS IL17RD KISS1R SLX4 PHGDH HS6ST1 CDHR1 HAMP CTNNB1 POLA1 BBS2 ELN LSS TRIM32 PALB2 MKS1 ROM1 SRA1 BBS2 LEPR POLR1C PRKACA PRPF3 FANCE FANCM DNM1L PDGFB HJV LRAT TRAF3IP1 SPRY4 FEZF1 KISS1 TACR3 POLG PREPL ANOS1 WDR11 HDAC8 CERKL CLRN1 PTCH1 PROKR2 SRY STEAP3 FEZF1 BBS2 NTN1 TOPORS FMR1 DMXL2 AR POLR3A DHH BRAF SMAD4 BBS12 IFT172 CHD7 FGF8 TWNK SNRPN USH2A DMRT1 C8ORF37 WDPCP SGPL1 FLRT3 SNAP29 CCDC141 LMNA IPW MAGEL2 PLXND1 NF2 LMNA HGSNAT WDR11 FGFR1 SEMA4A FANCE IDH3B CEP290 ABCD1 TWNK A2ML1 TTC8 CHD7 LHX4 GLI2 NSMF ABCA4 POLR3B ZNF513 FGF17 TP63 CRX STUB1 KLHL7 DCC CISD2 TTC8 FEZF1 ALMS1 POLR3B SIN3A LIMK1 BBIP1 RPE65 GALT CCDC28B ZBTB20 BRCA2 AHI1 AIRE AGBL5 PDE4D TULP1 CHD7 DHX38 STUB1 RAB3GAP2 ARL6 MAGEL2 ERCC5 PROKR2 SOX3 HFE MKRN3-AS1 AHSG IMPG2 IFT27 PWAR1 FGF8 PDE8B MEN1 MGME1 GNRH1 LMNA BBS1 WT1 NR0B1 GNAS POLR3A SLC3A1 KISS1 ZMPSTE24 ZBTB20 XPA KIZ FGFR1 NR5A1 REV3L RECQL4 SOX9 GNRHR IL17RD SEMA3E SPATA7 DDB2 FGF17 SOX2 MERTK FANCC CCDC141 WRN NRAS CHD7 BRIP1 BBS4 SLC7A14 PROKR2 LAS1L KCNAB2 CUL4B PDE6G RIN2 PRKAR1A ERCC8 GLI2 ARHGEF18 SAG XPC KISS1R CNBP POLE ATRX UBE2T FSCN2 PHF6 RRM2B CNGB1
Hypogonadotrophic hypogonadism
Genes 186
SNRPN SNORD116-1 GTF2I PCSK1 FGFR1 RAB3GAP1 HJV TACR3 DMRT1 AXL CTDP1 BAZ1B KRAS RASA2 FLRT3 SEMA3E SMARCB1 NSMF CCDC141 TACR3 TFR2 OTX2 PROK2 IPW PROP1 PLXND1 NF2 HSD17B3 SOS1 DCC PNPLA6 ANOS1 NPAP1 LMNA TYMP RFC2 WDR11 FGFR1 DUSP6 RAD51 RNF216 DNAL4 FGF8 MKRN3 RAF1 FLRT3 FSHB A2ML1 DUSP6 CHD7 LHX4 GLI2 TAC3 SIX6 NSMF POLR3B GNRH1 POLR3A POU1F1 WDR11 PNPLA6 GTF2IRD1 POLR3B PROP1 HESX1 FGF17 TP63 CTDP1 ANK1 GNRH1 SOX9 CHD7 SEMA3E DCAF17 SOX10 DCC RRAS2 TAC3 ANOS1 NSMF FEZF1 CDH23 POLR3B SPRY4 PMM2 LIMK1 SEMA3A RBM28 BRAF PWRN1 LHB CCDC141 FOXA2 PROK2 PNPLA6 CHD7 NR0B1 KISS1R PTPN11 NR0B1 NDN RAB3GAP2 HS6ST1 MAGEL2 PROKR2 SOX3 CDH23 HFE MKRN3-AS1 CLIP2 BMP2 CTNNB1 SPRY4 DUSP6 MAP3K1 SOS2 LAS1L PTCH2 ELN PWAR1 CBX2 RNF216 RRAS PROK2 FGF8 MRAS MEN1 SUFU PNPLA6 GNRHR RNU4ATAC GNRH1 GPR101 KISS1R HS6ST1 SRA1 HESX1 POLR3A WT1 KISS1 ZMPSTE24 LZTR1 TBL2 FGFR1 PDGFB NR5A1 AIP REV3L SNORD115-1 GNRHR IL17RD SPRY4 FEZF1 SEMA3E KISS1 FGF17 TACR3 SOX2 CCDC141 SUFU ANOS1 WDR11 RAB3GAP2 NRAS CHD7 HDAC8 AIP PTCH1 KAT6B PROKR2 PROKR2 SRY NTN1 FGF17 POLR3A GJB2 KISS1R IL17RD DHH BRAF HERC2 RRM2B RIT1 CHD7 POLG FGF8